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maxquant:user:change_log

Change Log

[1.6.3.3] - 2018-10-24

Added

  • Support for the mzTab file format

Changed

  • Parameter for isobaric labels works different now. Correction factors are not configured with the modification any more, but they are specified in the parameter. This allows for analyzing multiple batches with different correction factors together.
  • The channel index for isobaric labels is now one-based. It used to be zero-based.
  • Mass deficit is only calculated for peptides lighter than 2000Da
  • Stability improvements for large number of threads (>=120)

[1.6.2.10] - 2018-07-26

Fixed

  • TIMS-TOF workflow stable

[1.6.2.6] - 2018-07-04

Added

  • “Checking fasta files” step at the beginning
  • “Variation search” is fully enabled

[1.6.2.3] - 2018-06-11

Fixed

  • MaxQuant-247 MQ is crashing if more than one parameter group is specified

[1.6.2.2] - 2018-06-10

Added

Fixed

  • MaxQuant-246 some searches crash after main search (error reading search results)
  • MaxQuant-243 MaxQuant 1.6.2.1 creates invalid XML in mqpar file (spaces in encoding specification) resolved

[1.6.2.1] - 2018-06-01

Added

  • A new commandline interface for AndromedaCmd.exe

Fixed

  • “mqpar.xml conversion error” is resolved (MaxQuant-242)
  • Bruker TIMS files are loadable

[1.6.2.0] - 2018-05-25

Added

  • Fasta file input parameter: parse rules and taxonomy can now be specified in the parameter tabs
  • Bruker TIMS Tof PASEF is supported
  • Additional parameters for command line call

Fixed

  • “Could not find file tmpPeptideFiles” is resolved (MaxQuant-192)

[1.6.1.0] - 2017-12-08

Fixed

  • MaxQuant running smoothly on Ubuntu Linux
  • MaxQuant-222 Fragmentation type always identified as CID

[1.6.0.16] - 2017-08-29

Fixed

  • Added missing button icons/tool tips to Andromeda configuration parse rule testing GUI [MaxQuant-197].
  • MaxQuant-191 Export of MS/MS spectrum to pdf in MaxQuant 1.6.0.1 viewer
  • Equal results between mono and .NET framework

[1.6.0.13] - 2017-08-11

Added

  • Raw data access API is in open source code on GitHub
  • MzXml raw data reader is in open source code on GitHub

Fixed

  • 3D spectrum viewer is working again.
  • MS3 based TMT quantification is working again.
  • Special characters as german umlauts can be used in file paths for Bruker.

[1.5.8.0] - 2017-03-13

Added

  • Winforms based GUI.

[1.5.7.4] - 2017-01-27

Fixed

  • Group-specific parameters are loaded properly from the mqpar.xml file.
  • Command line version works again.

[1.5.7.0] - 2017-01-12

Fixed

  • Support for NeuCode labeling added.

[1.5.6.5] - 2016-11-22

Fixed

  • Removed possibility to load zipped fasta files since it is not working.
  • Specifying fractions does not lead to a crash any more upon clicking starrt.

[1.5.6.0] - 2016-10-31

Added

  • This version corresponds to the feature set described in the the publication Tyanova et al. (2016) Nature Protocols 11, 2301-19.
maxquant/user/change_log.txt · Last modified: 2018/10/11 16:38 by sinitcyn