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maxquant:start [2017/12/04 15:45]
art [Documentation outline]
maxquant:start [2018/10/30 11:49] (current)
yilmaz
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 ====== MaxQuant ====== ====== MaxQuant ======
  
-MaxQuant is a quantitative ​proteomics software package designed for analyzing large mass-spectrometric data sets. It is specifically aimed at high-resolution MS data. Several labeling techniques as well as label-free quantification are supported. MaxQuant is freely available and can be downloaded from this site. The download includes the search engine [[maxquant:​andromeda:​start]],​ which is integrated into MaxQuant as well as the [[maxquant:​viewer:​start]] application for inspection of raw data and identification and quantification results. For statistical analysis of MaxQuant output, we offer the [[Perseus:​start]] framework.+MaxQuant is a proteomics software package designed for analyzing large mass-spectrometric data sets. It is specifically aimed at high-resolution MS data. Several labeling techniques as well as label-free quantification are supported. MaxQuant is freely available and can be downloaded from this site. The download includes the search engine [[maxquant:​andromeda:​start]],​ which is integrated into MaxQuant as well as the [[maxquant:​viewer:​start]] application for inspection of raw data and identification and quantification results. For statistical analysis of MaxQuant output, we offer the [[Perseus:​start]] framework.
  
  
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 Tyanova, S., Temu, T., Carlson, A., Sinitcyn, P., Mann, M. and Cox, J., [[http://​onlinelibrary.wiley.com/​doi/​10.1002/​pmic.201400449/​abstract|Visualization of LC-MS/MS proteomics data in MaxQuant]], //​Proteomics//,​ 2015, 15, pp 1453–1456 Tyanova, S., Temu, T., Carlson, A., Sinitcyn, P., Mann, M. and Cox, J., [[http://​onlinelibrary.wiley.com/​doi/​10.1002/​pmic.201400449/​abstract|Visualization of LC-MS/MS proteomics data in MaxQuant]], //​Proteomics//,​ 2015, 15, pp 1453–1456
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 +Tyanova, S., Temu, T., and Cox, J., [[https://​www.nature.com/​articles/​nprot.2016.136|The MaxQuant computational platform for mass spectrometry-based shotgun proteomics]],​ //Nat Protocols//,​ 2016, 11, pp 2301–2319
 +\\ **Note that this paper explains how to run MaxQuant in detail.**
  
  
maxquant/start.txt · Last modified: 2018/10/30 11:49 by yilmaz